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2006

Luszczek, P., “High Performance Development for High End Computing with Python Language Wrapper (PLW),” International Journal of High Performance Computing Applications (to appear), 00 2006.

(179.32 KB)

Shipman, G. M., G. Bosilca, and A. B. Maccabe, “High Performance RDMA Protocols in HPC,” Euro PVM/MPI 2006, Bonn, Germany, September 2006.

(1.06 MB)

Graham, R. L., G. M. Shipman, B. Barrett, R. Castain, G. Bosilca, and A. Lumsdaine, “A High-Performance, Heterogeneous MPI,” HeteroPar 2006, Barcelona, Spain, September 2006.

(193.73 KB)

Luszczek, P., D. Bailey, J. Dongarra, J. Kepner, R. Lucas, R. Rabenseifner, and D. Takahashi, “The HPC Challenge (HPCC) Benchmark Suite,” SC06 Conference Tutorial, Tampa, Florida, IEEE, November 2006.

(1.08 MB)

Buttari, A., J. Dongarra, J. Kurzak, J. Langou, P. Luszczek, and S. Tomov, “The Impact of Multicore on Math Software,” PARA 2006, Umea, Sweden, June 2006.

(223.53 KB)

Keller, R., G. Bosilca, G. Fagg, M. Resch, and J. Dongarra, “Implementation and Usage of the PERUSE-Interface in Open MPI,” Euro PVM/MPI 2006, Bonn, Germany, September 2006.

(310.76 KB)

Kurzak, J., and J. Dongarra, “Implementation of the Mixed-Precision High Performance LINPACK Benchmark on the CELL Processor,” University of Tennessee Computer Science Tech Report, no. UT-CS-06-580, LAPACK Working Note #177, September 2006.

(506.18 KB)

Kurzak, J., and J. Dongarra, “Implementing Linear Algebra Routines on Multi-Core Processors with Pipelining and a Look Ahead,” University of Tennessee Computer Science Tech Report, UT-CS-06-581, LAPACK Working Note #178, January 2006.

(304.4 KB)

Jeannot, E., K. Seymour, A. YarKhan, and J. Dongarra, “Improved Runtime and Transfer Time Prediction Mechanisms in a Network Enabled Server,” Parallel Processing Letters, vol. 17, no. 1, pp. 47-59, March 2006.

(718.4 KB)

Wolf, F., F. Freitag, B. Mohr, S. Moore, and B. Wylie, “Large Event Traces in Parallel Performance Analysis,” 8th Workshop 'Parallel Systems and Algorithms' (PASA), Lecture Notes in Informatics, no. ICL-UT-06-08, Frankfurt/Main, Germany, Gesellschaft für Informatik, March 2006.

(92.47 KB)

Song, F., S. Moore, and J. Dongarra, “Modeling of L2 Cache Behavior for Thread-Parallel Scientific Programs on Chip Multi-Processors,” University of Tennessee Computer Science Technical Report, no. UT-CS-06-583, January 2006.

(652.93 KB)

Pjesivac–Grbovic, J., G. Fagg, T. Angskun, G. Bosilca, and J. Dongarra, “MPI Collective Algorithm Selection and Quadtree Encoding,” Lecture Notes in Computer Science, vol. 4192, no. ICL-UT-06-13: Springer Berlin / Heidelberg, pp. 40-48, September 2006.

(308.39 KB)

Pjesivac–Grbovic, J., G. Fagg, T. Angskun, G. Bosilca, and J. Dongarra, “MPI Collective Algorithm Selection and Quadtree Encoding,” ICL Technical Report, no. ICL-UT-06-11, 00 2006.

(308.39 KB)

Canning, A., J. Dongarra, J. Langou, O. Marques, S. Tomov, C. Voemel, and L-W. Wang, “Performance evaluation of eigensolvers in nano-structure computations,” IEEE/ACM Proceedings of HPCNano SC06 (to appear), January 2006.

(120.61 KB)

Hernandez, O., F. Song, B. Chapman, J. Dongarra, B. Mohr, S. Moore, and F. Wolf, “Performance Instrumentation and Compiler Optimizations for MPI/OpenMP Applications,” Second International Workshop on OpenMP, Reims, France, January 2006.

(350.9 KB)

Dongarra, J., “Performance of Various Computers Using Standard Linear Equations Software (Linpack Benchmark Report),” University of Tennessee Computer Science Department Technical Report, UT-CS-04-526, vol. –89-95, January 2006.

(6.42 MB)

Zunger, A., A. Franceschetti, G. Bester, W. B. Jones, K. Kim, P. A. Graf, L-W. Wang, A. Canning, O. Marques, C. Voemel, et al., “Predicting the electronic properties of 3D, million-atom semiconductor nanostructure architectures,” J. Phys.: Conf. Ser. 46, vol. :101088/1742-6596/46/1/040, pp. 292-298, January 2006.

(644.1 KB)

Tang, Y., G. Fagg, and J. Dongarra, “Proposal of MPI operation level Checkpoint/Rollback and one implementation,” Proceedings of IEEE CCGrid 2006: IEEE Computer Society, January 2006.

(277.27 KB)

Demmel, J., J. Dongarra, B.. Parlett, W. Kahan, M. Gu, D. Bindel, Y. Hida, X. Li, O. Marques, J. E. Riedy, et al., “Prospectus for the Next LAPACK and ScaLAPACK Libraries,” PARA 2006, Umea, Sweden, June 2006.

(460.11 KB)

YarKhan, A., K. Seymour, K. Sagi, Z. Shi, and J. Dongarra, “Recent Developments in GridSolve,” International Journal of High Performance Computing Applications (Special Issue: Scheduling for Large-Scale Heterogeneous Platforms), vol. 20, no. 1: Sage Science Press, 00 2006.

(496.69 KB)

Angskun, T., G. Fagg, G. Bosilca, J. Pjesivac–Grbovic, and J. Dongarra, “Scalable Fault Tolerant Protocol for Parallel Runtime Environments,” 2006 Euro PVM/MPI, no. ICL-UT-06-12, Bonn, Germany, 00 2006.

(149.07 KB)

Bosilca, G., Z. Chen, J. Dongarra, V. Eijkhout, G. Fagg, E. Fuentes, J. Langou, P. Luszczek, J. Pjesivac–Grbovic, K. Seymour, et al., “Self Adapting Numerical Software SANS Effort,” IBM Journal of Research and Development, vol. 50, no. 2/3, pp. 223-238, January 2006.

(357.53 KB)

Angskun, T., G. Fagg, G. Bosilca, J. Pjesivac–Grbovic, and J. Dongarra, “Self-Healing Network for Scalable Fault Tolerant Runtime Environments,” DAPSYS 2006, 6th Austrian-Hungarian Workshop on Distributed and Parallel Systems, Innsbruck, Austria, January 2006.

(162.83 KB)

Aguilera, G., P. J. Teller, M. Taufer, and F. Wolf, “A Systematic Multi-step Methodology for Performance Analysis of Communication Traces of Distributed Applications based on Hierarchical Clustering,” Proc. of the 5th International Workshop on Performance Modeling, Evaluation, and Organization of Parallel and Distributed Systems (PMEO-PDS 2006), no. ICL-UT-05-06, Rhodes Island, Greece, IEEE Computer Society, April 2006.

(1.02 MB)

Tang, Y., “Technical Comparison between several representative checkpoint/rollback solutions for MPI programs,” ICL Technical Report, no. ICL-UT-06-09, January 2006.

(84.67 KB)

Canning, A., J. Dongarra, J. Langou, O. Marques, S. Tomov, C. Voemel, and L-W. Wang, “Towards bulk based preconditioning for quantum dot computations,” IEEE/ACM Proceedings of HPCNano SC06 (to appear), January 2006.

(172.46 KB)

Dongarra, J., G. H. Golub, E. Grosse, C. Moler, and K. Moore, “Twenty-Plus Years of Netlib and NA-Net,” University of Tennessee Computer Science Department Technical Report, UT-CS-04-526, 00 2006.

(62.79 KB)

Voemel, C., S. Tomov, L-W. Wang, O. Marques, and J. Dongarra, “The use of bulk states to accelerate the band edge state calculation of a semiconductor quantum dot,” Journal of Computational Physics (submitted), January 2006.

(337.08 KB)

2007

You, H., K. Seymour, J. Dongarra, and S. Moore, “Automated Empirical Tuning of a Multiresolution Analysis Kernel,” ICL Technical Report, no. ICL-UT-07-01, pp. 10, January 2007.

(120.7 KB)

Wolf, F., B. Mohr, J. Dongarra, and S. Moore, “Automatic Analysis of Inefficiency Patterns in Parallel Applications,” Concurrency and Computation: Practice and Experience, vol. 19, no. 11, pp. 1481-1496, August 2007.

(233.31 KB)

Angskun, T., G. Bosilca, and J. Dongarra, “Binomial Graph: A Scalable and Fault- Tolerant Logical Network Topology,” Proceedings of The Fifth International Symposium on Parallel and Distributed Processing and Applications (ISPA07), Niagara Falls, Canada, Springer, August 2007.

(480.47 KB)

Dongarra, J., E. Jeannot, E. Saule, and Z. Shi, “Bi-objective Scheduling Algorithms for Optimizing Makespan and Reliability on Heterogeneous Systems,” 19th ACM Symposium on Parallelism in Algorithms and Architectures (SPAA) (submitted), San Diego, CA, June 2007.

(223.82 KB)

Buttari, A., J. Langou, J. Kurzak, and J. Dongarra, “A Class of Parallel Tiled Linear Algebra Algorithms for Multicore Architectures,” University of Tennessee Computer Science Technical Report, no. UT-CS-07-600 (also LAPACK Working Note 191), January 2007.

(274.74 KB)

Graham, R. L., G. Bosilca, and J. Pjesivac–Grbovic, “A Comparison of Application Performance Using Open MPI and Cray MPI,” Cray User Group, CUG 2007, May 2007.

(248.83 KB)

Baboulin, M., J. Dongarra, S. Gratton, and J. Langou, “Computing the Conditioning of the Components of a Linear Least Squares Solution,” University of Tennessee Computer Science Technical Report, no. UT-CS-07-604, (also LAPACK Working Note 193), January 2007.

(374.97 KB)

Fürlinger, K., and S. Moore, “Continuous Runtime Profiling of OpenMP Applications,” Proceedings of the 2007 Conference on Parallel Computing (PARCO 2007), Juelich and Aachen, Germany, January 2007.

(408.01 KB)

Mellor-Crummey, J., P. Beckman, J. Dongarra, B. Miller, and K. Yelick, “Creating Software Technology to Harness the Power of Leadership-class Computing Systems,” DOE SciDAC Review (to appear), June 2007.

(617.02 KB)

Pjesivac–Grbovic, J., G. Bosilca, G. Fagg, T. Angskun, and J. Dongarra, “Decision Trees and MPI Collective Algorithm Selection Problem,” Euro-Par 2007, Rennes, France, Springer, pp. 105–115, August 2007.

(552.94 KB)

Dongarra, J., Z. Chen, G. Bosilca, and J. Langou, “Disaster Survival Guide in Petascale Computing: An Algorithmic Approach,” in Petascale Computing: Algorithms and Applications (to appear): Chapman & Hall - CRC Press, 00 2007.

(260.18 KB)

You, H., K. Seymour, J. Dongarra, and S. Moore, “Empirical Tuning of a Multiresolution Analysis Kernel using a Specialized Code Generator,” ICL Technical Report, no. ICL-UT-07-02, January 2007.

(123.34 KB)

Graham, R. L., R. Brightwell, B. Barrett, G. Bosilca, and J. Pjesivac–Grbovic, “An Evaluation of Open MPI's Matching Transport Layer on the Cray XT,” EuroPVM/MPI 2007, September 2007.

(369.01 KB)

Buttari, A., J. Dongarra, J. Kurzak, J. Langou, J. Langou, P. Luszczek, and S. Tomov, “Exploiting Mixed Precision Floating Point Hardware in Scientific Computations,” In High Performance Computing and Grids in Action (to appear), Amsterdam, IOS Press, 00 2007.

(122.01 KB)

Song, F., S. Moore, and J. Dongarra, “Feedback-Directed Thread Scheduling with Memory Considerations,” IEEE International Symposium on High Performance Distributed Computing, Monterey Bay, CA, June 2007.

(297.24 KB)

YarKhan, A., J. Dongarra, and K. Seymour, “GridSolve: The Evolution of Network Enabled Solver,” Grid-Based Problem Solving Environments: IFIP TC2/WG 2.5 Working Conference on Grid-Based Problem Solving Environments (Prescott, AZ, July 2006): Springer, pp. 215-226, 00 2007.

(377.48 KB)

Dongarra, J., and P. Luszczek, “High Performance Development for High End Computing with Python Language Wrapper (PLW),” International Journal for High Performance Computer Applications, vol. 21, no. 3, pp. 360-369, 00 2007.

(179.32 KB)

Dongarra, J., and P. Luszczek, “How Elegant Code Evolves With Hardware: The Case Of Gaussian Elimination,” in Beautiful Code Leading Programmers Explain How They Think: O'Reilly Media, Inc., June 2007.

(257 KB)

Dongarra, J., D. Gannon, G. Fox, and K. Kennedy, “The Impact of Multicore on Computational Science Software,” CTWatch Quarterly, vol. 3, issue 1, February 2007.

Kurzak, J., and J. Dongarra, “Implementation of Mixed Precision in Solving Systems of Linear Equations on the Cell Processor,” Concurrency and Computation: Practice and Experience, vol. 19, no. 10, pp. 1371-1385, July 2007.

(453.78 KB)

Jeannot, E., K. Seymour, A. YarKhan, and J. Dongarra, “Improved Runtime and Transfer Time Prediction Mechanisms in a Network Enabled Servers Middleware,” Parallel Processing Letters, vol. 17, no. 1, pp. 47-59, March 2007.

(718.4 KB)

Song, F., S. Moore, and J. Dongarra, “L2 Cache Modeling for Scientific Applications on Chip Multi-Processors,” Proceedings of the 2007 International Conference on Parallel Processing, Xi'an, China, IEEE Computer Society, January 2007.

(654.11 KB)

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