Publications

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2006
Song, F., J. Dongarra, and S. Moore, “Experiments with Strassen's Algorithm: From Sequential to Parallel,” 18th IASTED International Conference on Parallel and Distributed Computing and Systems PDCS 2006 (submitted), Dallas, Texas, January 2006.  (514.33 KB)
Langou, J., J. Langou, P. Luszczek, J. Kurzak, A. Buttari, and J. Dongarra, “Exploiting the Performance of 32 bit Floating Point Arithmetic in Obtaining 64 bit Accuracy,” University of Tennessee Computer Science Tech Report, no. UT-CS-06-574, LAPACK Working Note #175, April 2006.  (221.39 KB)
Fagg, G., J. Pjesivac–Grbovic, G. Bosilca, T. Angskun, and J. Dongarra, “Flexible collective communication tuning architecture applied to Open MPI,” 2006 Euro PVM/MPI (submitted), Bonn, Germany, January 2006.  (206.58 KB)
Luszczek, P., D. Bailey, J. Dongarra, J. Kepner, R. Lucas, R. Rabenseifner, and D. Takahashi, “The HPC Challenge (HPCC) Benchmark Suite,” SC06 Conference Tutorial, Tampa, Florida, IEEE, November 2006.  (1.08 MB)
Buttari, A., J. Dongarra, J. Kurzak, J. Langou, P. Luszczek, and S. Tomov, “The Impact of Multicore on Math Software,” PARA 2006, Umea, Sweden, June 2006.  (223.53 KB)
Keller, R., G. Bosilca, G. Fagg, M. Resch, and J. Dongarra, “Implementation and Usage of the PERUSE-Interface in Open MPI,” Euro PVM/MPI 2006, Bonn, Germany, September 2006.  (310.76 KB)
Kurzak, J., and J. Dongarra, “Implementation of the Mixed-Precision High Performance LINPACK Benchmark on the CELL Processor,” University of Tennessee Computer Science Tech Report, no. UT-CS-06-580, LAPACK Working Note #177, September 2006.  (506.18 KB)
Kurzak, J., and J. Dongarra, “Implementing Linear Algebra Routines on Multi-Core Processors with Pipelining and a Look Ahead,” University of Tennessee Computer Science Tech Report, UT-CS-06-581, LAPACK Working Note #178, January 2006.  (304.4 KB)
Jeannot, E., K. Seymour, A. YarKhan, and J. Dongarra, “Improved Runtime and Transfer Time Prediction Mechanisms in a Network Enabled Server,” Parallel Processing Letters, vol. 17, no. 1, pp. 47-59, March 2006.  (718.4 KB)
Song, F., S. Moore, and J. Dongarra, “Modeling of L2 Cache Behavior for Thread-Parallel Scientific Programs on Chip Multi-Processors,” University of Tennessee Computer Science Technical Report, no. UT-CS-06-583, January 2006.  (652.93 KB)
Pjesivac–Grbovic, J., G. Fagg, T. Angskun, G. Bosilca, and J. Dongarra, “MPI Collective Algorithm Selection and Quadtree Encoding,” Lecture Notes in Computer Science, vol. 4192, no. ICL-UT-06-13: Springer Berlin / Heidelberg, pp. 40-48, September 2006.  (308.39 KB)
Pjesivac–Grbovic, J., G. Fagg, T. Angskun, G. Bosilca, and J. Dongarra, “MPI Collective Algorithm Selection and Quadtree Encoding,” ICL Technical Report, no. ICL-UT-06-11, 00 2006.  (308.39 KB)
Canning, A., J. Dongarra, J. Langou, O. Marques, S. Tomov, C. Voemel, and L-W. Wang, “Performance evaluation of eigensolvers in nano-structure computations,” IEEE/ACM Proceedings of HPCNano SC06 (to appear), January 2006.  (120.61 KB)
Hernandez, O., F. Song, B. Chapman, J. Dongarra, B. Mohr, S. Moore, and F. Wolf, “Performance Instrumentation and Compiler Optimizations for MPI/OpenMP Applications,” Second International Workshop on OpenMP, Reims, France, January 2006.  (350.9 KB)
Dongarra, J., “Performance of Various Computers Using Standard Linear Equations Software (Linpack Benchmark Report),” University of Tennessee Computer Science Department Technical Report, UT-CS-04-526, vol. –89-95, January 2006.  (6.42 MB)
Zunger, A., A. Franceschetti, G. Bester, W. B. Jones, K. Kim, P. A. Graf, L-W. Wang, A. Canning, O. Marques, C. Voemel, et al., “Predicting the electronic properties of 3D, million-atom semiconductor nanostructure architectures,” J. Phys.: Conf. Ser. 46, vol. :101088/1742-6596/46/1/040, pp. 292-298, January 2006.  (644.1 KB)
Tang, Y., G. Fagg, and J. Dongarra, “Proposal of MPI operation level Checkpoint/Rollback and one implementation,” Proceedings of IEEE CCGrid 2006: IEEE Computer Society, January 2006.  (277.27 KB)
Demmel, J., J. Dongarra, B. Parlett, W. Kahan, M. Gu, D. Bindel, Y. Hida, X. Li, O. Marques, J. E. Riedy, et al., “Prospectus for the Next LAPACK and ScaLAPACK Libraries,” PARA 2006, Umea, Sweden, June 2006.  (460.11 KB)
YarKhan, A., K. Seymour, K. Sagi, Z. Shi, and J. Dongarra, “Recent Developments in GridSolve,” International Journal of High Performance Computing Applications (Special Issue: Scheduling for Large-Scale Heterogeneous Platforms), vol. 20, no. 1: Sage Science Press, 00 2006.  (496.69 KB)
Angskun, T., G. Fagg, G. Bosilca, J. Pjesivac–Grbovic, and J. Dongarra, “Scalable Fault Tolerant Protocol for Parallel Runtime Environments,” 2006 Euro PVM/MPI, no. ICL-UT-06-12, Bonn, Germany, 00 2006.  (149.07 KB)
Bosilca, G., Z. Chen, J. Dongarra, V. Eijkhout, G. Fagg, E. Fuentes, J. Langou, P. Luszczek, J. Pjesivac–Grbovic, K. Seymour, et al., “Self Adapting Numerical Software SANS Effort,” IBM Journal of Research and Development, vol. 50, no. 2/3, pp. 223-238, January 2006.  (357.53 KB)
Angskun, T., G. Fagg, G. Bosilca, J. Pjesivac–Grbovic, and J. Dongarra, “Self-Healing Network for Scalable Fault Tolerant Runtime Environments,” DAPSYS 2006, 6th Austrian-Hungarian Workshop on Distributed and Parallel Systems, Innsbruck, Austria, January 2006.  (162.83 KB)
Canning, A., J. Dongarra, J. Langou, O. Marques, S. Tomov, C. Voemel, and L-W. Wang, “Towards bulk based preconditioning for quantum dot computations,” IEEE/ACM Proceedings of HPCNano SC06 (to appear), January 2006.  (172.46 KB)
Dongarra, J., G. H. Golub, E. Grosse, C. Moler, and K. Moore, “Twenty-Plus Years of Netlib and NA-Net,” University of Tennessee Computer Science Department Technical Report, UT-CS-04-526, 00 2006.  (62.79 KB)
Voemel, C., S. Tomov, L-W. Wang, O. Marques, and J. Dongarra, “The use of bulk states to accelerate the band edge state calculation of a semiconductor quantum dot,” Journal of Computational Physics (submitted), January 2006.  (337.08 KB)
2005
Chen, Z., and J. Dongarra, “Algorithm-Based Checkpoint-Free Fault Tolerance for Parallel Matrix Computations on Volatile Resources,” University of Tennessee Computer Science Department Technical Report, vol. –05-561, November 2005.  (266.54 KB)
Wolf, F., B. Mohr, J. Dongarra, and S. Moore, “Automatic analysis of inefficiency patterns in parallel applications,” Concurrency and Computation: Practice and Experience, Special issue "Automatic Performance Analysis" (submitted), 00 2005.  (233.31 KB)
Bhatia, N., F. Song, F. Wolf, J. Dongarra, B. Mohr, and S. Moore, “Automatic Experimental Analysis of Communication Patterns in Virtual Topologies,” In Proceedings of the International Conference on Parallel Processing, Oslo, Norway, IEEE Computer Society, June 2005.  (227.13 KB)
YarKhan, A., and J. Dongarra, “Biological Sequence Alignment on the Computational Grid Using the GrADS Framework,” Future Generation Computing Systems, vol. 21, no. 6: Elsevier, pp. 980-986, June 2005.  (147.29 KB)
Tomov, S., J. Langou, A. Canning, L-W. Wang, and J. Dongarra, “Comparison of Nonlinear Conjugate-Gradient methods for computing the Electronic Properties of Nanostructure Architectures,” Proceedings of 5th International Conference on Computational Science (ICCS), Atlanta, GA, USA, Springer's Lecture Notes in Computer Science, pp. 317-325, January 2005.  (172.86 KB)
Tomov, S., J. Langou, A. Canning, L-W. Wang, and J. Dongarra, “Comparison of Nonlinear Conjugate-Gradient methods for computing the Electronic Properties of Nanostructure Architectures,” Proceedings of 5th International Conference on Computational Science (ICCS), Atlanta, GA, USA, Springer's Lecture Notes in Computer Science, pp. 317-325, January 2005.  (172.86 KB)
Eijkhout, V., E. Fuentes, T. Eidson, and J. Dongarra, “The Component Structure of a Self-Adapting Numerical Software System,” International Journal of Parallel Programming, vol. 33, no. 2, June 2005.  (64.88 KB)
Chen, Z., and J. Dongarra, “Condition Numbers of Gaussian Random Matrices,” University of Tennessee Computer Science Department Technical Report, vol. –04-539, 00 2005.  (186.46 KB)
Chen, Z., and J. Dongarra, “Condition Numbers of Gaussian Random Matrices,” SIAM Journal on Matrix Analysis and Applications (to appear), January 2005.  (186.46 KB)
Tomov, S., J. Langou, A. Canning, L-W. Wang, and J. Dongarra, “Conjugate-Gradient Eigenvalue Solvers in Computing Electronic Properties of Nanostructure Architectures,” International Journal of Computational Science and Engineering (to appear), January 2005.  (428.21 KB)
You, H., K. Seymour, and J. Dongarra, “An Effective Empirical Search Method for Automatic Software Tuning,” ICL Technical Report, no. ICL-UT-05-02, January 2005.  (74.66 KB)
Chen, Z., G. Fagg, E. Gabriel, J. Langou, T. Angskun, G. Bosilca, and J. Dongarra, “Fault Tolerant High Performance Computing by a Coding Approach,” Proceedings of ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming (to appear), Chicago, Illinois, January 2005.  (209.37 KB)
Bosilca, G., J. Dongarra, G. Fagg, and J. Langou, “Hash Functions for Datatype Signatures in MPI,” Proceedings of 12th European Parallel Virtual Machine and Message Passing Interface Conference - Euro PVM/MPI, vol. 3666, Sorrento (Naples), Italy, Springer-Verlag Berlin, pp. 76-83, September 2005.  (304.2 KB)
Moore, S., F. Wolf, J. Dongarra, and B. Mohr, “Improving Time to Solution with Automated Performance Analysis,” Second Workshop on Productivity and Performance in High-End Computing (P-PHEC) at 11th International Symposium on High Performance Computer Architecture (HPCA-2005), San Francisco, February 2005.  (112.63 KB)
Luszczek, P., J. Dongarra, D. Koester, R. Rabenseifner, B. Lucas, J. Kepner, J. McCalpin, D. Bailey, and D. Takahashi, Introduction to the HPC Challenge Benchmark Suite , March 2005.  (124.86 KB)
Dongarra, J., and P. Luszczek, “Introduction to the HPCChallenge Benchmark Suite,” ICL Technical Report, no. ICL-UT-05-01, January 2005.  (124.86 KB)
Demmel, J., and J. Dongarra, LAPACK 2005 Prospectus: Reliable and Scalable Software for Linear Algebra Computations on High End Computers : LAPACK Working Note 164, January 2005.  (172.59 KB)
Jones, W. B., G. Bester, A. Canning, A. Franceschetti, P. A. Graf, K. Kim, J. Langou, L-W. Wang, J. Dongarra, and A. Zunger, “NanoPSE: A Nanoscience Problem Solving Environment for Atomistic Electronic Structure of Semiconductor Nanostructures,” Journal of Physics: Conference Series, issue 16, pp. 277-282, June 2005. DOI: 10.1088/1742-6596/16/1/038  (476.64 KB)
Seymour, K., A. YarKhan, S. Agrawal, and J. Dongarra, “NetSolve: Grid Enabling Scientific Computing Environments,” Grid Computing and New Frontiers of High Performance Processing, no. 14: Elsevier, 00 2005.  (425 KB)
Berman, F., H. Casanova, A. Chien, K. Cooper, H. Dail, A. Dasgupta, W. Deng, J. Dongarra, L. Johnsson, K. Kennedy, et al., “New Grid Scheduling and Rescheduling Methods in the GrADS Project,” International Journal of Parallel Programming, vol. 33, no. 2: Springer, pp. 209-229, June 2005.  (306.41 KB)
Dongarra, J., “A Not So Simple Matter of Software,” NCSA Access Online: NCSA, 00 2005.  (457.69 KB)
Chen, Z., and J. Dongarra, “Numerically Stable Real Number Codes Based on Random Matrices,” The International Conference on Computational Science, Atlanta, GA, LNCS 3514, Springer-Verlag, January 2005.  (166.2 KB)
Shimosaka, H., T. Hiroyasu, M. Miki, and J. Dongarra, “Optimization Problem Solving System Using GridRPC,” IEEE Transactions on Parallel and Distributed Systems (submitted), January 2005.  (740.57 KB)
Bhatia, N., S. Moore, F. Wolf, J. Dongarra, and B. Mohr, “A Pattern-Based Approach to Automated Application Performance Analysis,” Workshop on Patterns in High Performance Computing, University of Illinois at Urbana-Champaign, May 2005.  (3.47 MB)
Pjesivac–Grbovic, J., T. Angskun, G. Bosilca, G. Fagg, E. Gabriel, and J. Dongarra, “Performance Analysis of MPI Collective Operations,” Cluster Computing Journal (to appear), January 2005.  (1018.28 KB)

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