Publications

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Journal Article

Dongarra, J., M. Faverge, T. Herault, M. Jacquelin, J. Langou, and Y. Robert, “Hierarchical QR Factorization Algorithms for Multi-core Cluster Systems,” Parallel Computing, vol. 39, issue 4-5, pp. 212-232, May 2013.

(1.43 MB)

Dongarra, J., D. Gannon, G. Fox, and K. Kennedy, “The Impact of Multicore on Computational Science Software,” CTWatch Quarterly, vol. 3, issue 1, February 2007.

Keller, R., G. Bosilca, G. Fagg, M. Resch, and J. Dongarra, “Implementation and Usage of the PERUSE-Interface in Open MPI,” Euro PVM/MPI 2006, Bonn, Germany, September 2006.

(310.76 KB)

Dongarra, J., P. Beckman, T. Moore, P. Aerts, G. Aloisio, J-C. Andre, D. Barkai, J-Y. Berthou, T. Boku, B. Braunschweig, et al., “The International Exascale Software Project Roadmap,” International Journal of High Performance Computing, vol. 25, no. 1, pp. 3-60, January 2011.

(719.74 KB)

Anzt, H., T. Cojean, C. Yen-Chen, J. Dongarra, G. Flegar, P. Nayak, S. Tomov, Y. M. Tsai, and W. Wang, “Load-Balancing Sparse Matrix Vector Product Kernels on GPUs,” ACM Transactions on Parallel Computing, vol. 7, issue 1, March 2020.

(5.67 MB)

Agullo, E., C. Augonnet, J. Dongarra, M. Faverge, J. Langou, H. Ltaeif, and S. Tomov, “LU Factorization for Accelerator-Based Systems,” IEEE/ACS AICCSA 2011, Sharm-El-Sheikh, Egypt, December 2011.

(234.86 KB)

Farhan, M. Al, A. Abdelfattah, S. Tomov, M. Gates, D. Sukkari, A. Haidar, R. Rosenberg, and J. Dongarra, “MAGMA Templates for Scalable Linear Algebra on Emerging Architectures,” The International Journal of High Performance Computing Applications, vol. 34, issue 6, pp. 645-658, November 2020.

Dongarra, J., G. Fagg, R. Hempel, and D. W. Walker, “Message Passing Software Systems,” Encyclopedia of Electrical and Engineering, Supplement 1: John Wiley & Sons, Inc., 00 2000.

(289.38 KB)

Faverge, M., J. Herrmann, J. Langou, B. Lowery, Y. Robert, and J. Dongarra, “Mixing LU-QR Factorization Algorithms to Design High-Performance Dense Linear Algebra Solvers,” Journal of Parallel and Distributed Computing, vol. 85, pp. 32-46, November 2015.

(5.06 MB)

Pjesivac–Grbovic, J., G. Bosilca, G. Fagg, T. Angskun, and J. Dongarra, “MPI Collective Algorithm Selection and Quadtree Encoding,” Parallel Computing (Special Edition: EuroPVM/MPI 2006): Elsevier, 00 2007.

(308.39 KB)

Pjesivac–Grbovic, J., G. Fagg, T. Angskun, G. Bosilca, and J. Dongarra, “MPI Collective Algorithm Selection and Quadtree Encoding,” Lecture Notes in Computer Science, vol. 4192, no. ICL-UT-06-13: Springer Berlin / Heidelberg, pp. 40-48, September 2006.

(308.39 KB)

Kurzak, J., P. Luszczek, A. YarKhan, M. Faverge, J. Langou, H. Bouwmeester, and J. Dongarra, “Multithreading in the PLASMA Library,” Multi and Many-Core Processing: Architecture, Programming, Algorithms, & Applications: Taylor & Francis, 00 2013.

(536.28 KB)

Jones, W. B., G. Bester, A. Canning, A. Franceschetti, P. A. Graf, K. Kim, J. Langou, L-W. Wang, J. Dongarra, and A. Zunger, “NanoPSE: A Nanoscience Problem Solving Environment for Atomistic Electronic Structure of Semiconductor Nanostructures,” Journal of Physics: Conference Series, issue 16, pp. 277-282, June 2005.

(476.64 KB)

Agrawal, S., J. Dongarra, K. Seymour, and S. Vadhiyar, “NetSolve: Past, Present, and Future - A Look at a Grid Enabled Server,” Making the Global Infrastructure a Reality: Wiley Publishing, 00 2003.

(158.19 KB)

Petitet, A., S. Blackford, J. Dongarra, B. Ellis, G. Fagg, K. Roche, and S. Vadhiyar, “Numerical Libraries and The Grid,” International Journal of High Performance Applications and Supercomputing, vol. 15, no. 4, pp. 359-374, January 2001.

(67.09 KB)

Bak, S., C. Bertoni, S. Boehm, R. Budiardja, B. M. Chapman, J. Doerfert, M. Eisenbach, H. Finkel, O. Hernandez, J. Huber, et al., “OpenMP application experiences: Porting to accelerated nodes,” Parallel Computing, vol. 109, March 2022.

Fagg, G., E. Gabriel, and M. Resch, “Parallel IO Support for Meta-Computing Applications: MPI_Connect IO Applied to PACX-MPI,” 8th European PVM/MPI User's Group Meeting, Lecture Notes in Computer Science, vol. 2131, Greece, Springer Verlag, Berlin, September 2001.

(129.3 KB)

Bosilca, G., A. Bouteiller, A. Danalis, M. Faverge, T. Herault, and J. Dongarra, “PaRSEC: Exploiting Heterogeneity to Enhance Scalability,” IEEE Computing in Science and Engineering, vol. 15, issue 6, pp. 36-45, November 2013.

(2.16 MB)

Pjesivac–Grbovic, J., T. Angskun, G. Bosilca, G. Fagg, E. Gabriel, and J. Dongarra, “Performance Analysis of MPI Collective Operations,” Cluster Computing Journal (to appear), January 2005.

(1018.28 KB)

Pjesivac–Grbovic, J., T. Angskun, G. Bosilca, G. Fagg, E. Gabriel, and J. Dongarra, “Performance Analysis of MPI Collective Operations,” Cluster computing, vol. 10, no. 2: Springer Netherlands, pp. 127-143, June 2007.

(1018.28 KB)

Zunger, A., A. Franceschetti, G. Bester, W. B. Jones, K. Kim, P. A. Graf, L-W. Wang, A. Canning, O. Marques, C. Voemel, et al., “Predicting the electronic properties of 3D, million-atom semiconductor nanostructure architectures,” J. Phys.: Conf. Ser. 46, vol. :101088/1742-6596/46/1/040, pp. 292-298, January 2006.

(644.1 KB)

Fagg, G., E. Gabriel, Z. Chen, T. Angskun, G. Bosilca, J. Pjesivac–Grbovic, and J. Dongarra, “Process Fault-Tolerance: Semantics, Design and Applications for High Performance Computing,” International Journal for High Performance Applications and Supercomputing (to appear), April 2004.

(186.9 KB)

Fürlinger, K., and S. Moore, “Recording the Control Flow of Parallel Applications to Determine Iterative and Phase-Based Behavior,” Future Generation Computing Systems, vol. 26, pp. 162-166, 00 2009.

Agullo, E., M. Altenbernd, H. Anzt, L. Bautista-Gomez, T. Benacchio, L. Bonaventura, H-J. Bungartz, S. Chatterjee, F. M. Ciorba, N. DeBardeleben, et al., “Resiliency in numerical algorithm design for extreme scale simulations,” The International Journal of High Performance Computing Applications, vol. 36371337212766180823, issue 2, pp. 251 - 285, March 2022.

Angskun, T., G. Fagg, G. Bosilca, J. Pjesivac–Grbovic, and J. Dongarra, “Scalable Fault Tolerant Protocol for Parallel Runtime Environments,” 2006 Euro PVM/MPI, no. ICL-UT-06-12, Bonn, Germany, 00 2006.

(149.07 KB)

Fagg, G., K. Moore, and J. Dongarra, “Scalable Networked Information Processing Environment (SNIPE),” Journal on Future Generation Computer Systems, vol. 15, no. 5/6, pp. 595-605, January 1999.

(189.21 KB)

Dail, H., O. Sievert, F. Berman, H. Casanova, A. YarKhan, S. Vadhiyar, J. Dongarra, C. Liu, L. Yang, D. Angulo, et al., “Scheduling in the Grid Application Development Software Project,” Resource Management in the Grid: Kluwer Publishers, March 2003.

(375.92 KB)

Bosilca, G., Z. Chen, J. Dongarra, V. Eijkhout, G. Fagg, E. Fuentes, J. Langou, P. Luszczek, J. Pjesivac–Grbovic, K. Seymour, et al., “Self Adapting Numerical Software SANS Effort,” IBM Journal of Research and Development, vol. 50, no. 2/3, pp. 223-238, January 2006.

(357.53 KB)

Angskun, T., G. Fagg, G. Bosilca, J. Pjesivac–Grbovic, and J. Dongarra, “Self-Healing Network for Scalable Fault-Tolerant Runtime Environments,” Future Generation Computer Systems, vol. 26, no. 3, pp. 479-485, March 2010.

(1.54 MB)

Gerndt, M., and K. Fürlinger, “Specification and detection of performance problems with ASL,” Concurrency and Computation: Practice and Experience, vol. 19, no. 11: John Wiley and Sons Ltd., pp. 1451-1464, January 2007.

Abdelfattah, A., H. Anzt, E. G. Boman, E. Carson, T. Cojean, J. Dongarra, A. Fox, M. Gates, N. J. Higham, X. S. Li, et al., “A survey of numerical linear algebra methods utilizing mixed-precision arithmetic,” The International Journal of High Performance Computing Applications, vol. 35, no. 4, pp. 344–369, 2021.

Donfack, S., J. Dongarra, M. Faverge, M. Gates, J. Kurzak, P. Luszczek, and I. Yamazaki, “A Survey of Recent Developments in Parallel Implementations of Gaussian Elimination,” Concurrency and Computation: Practice and Experience, vol. 27, issue 5, pp. 1292-1309, April 2015.

(783.45 KB)

Kennedy, K., B. Broom, K. Cooper, J. Dongarra, R. Fowler, D. Gannon, L. Johnsson, J. Mellor-Crummey, and L. Torczon, “Telescoping Languages: A Strategy for Automatic Generation of Scientific Problem-Solving Systems from Annotated Libraries,” Journal of Parallel and Distributed Computing, vol. 61, no. 12, pp. 1803-1826, December 2001.

(386.37 KB)

Anzt, H., G. Flegar, T. Gruetzmacher, and E. S. Quintana-Orti, “Toward a Modular Precision Ecosystem for High-Performance Computing,” The International Journal of High Performance Computing Applications, vol. 33, issue 6, pp. 1069-1078, November 2019.

(1.93 MB)

Vadhiyar, S., G. Fagg, and J. Dongarra, “Towards an Accurate Model for Collective Communications,” International Journal of High Performance Applications, Special Issue: Automatic Performance Tuning, vol. 18, no. 1, pp. 159-167, January 2004.

(250.73 KB)

Du, P., M. Parsons, E. Fuentes, S-L. Shaw, and J. Dongarra, “Tuning Principal Component Analysis for GRASS GIS on Multi-core and GPU Architectures,” FOSS4G 2010, Barcelona, Spain, September 2010.

(1.57 MB)

Aliaga, J. I., H. Anzt, M. Castillo, J. C. Fernández, G. León, J. Pérez, and E. S. Quintana-Orti, “Unveiling the Performance-energy Trade-off in Iterative Linear System Solvers for Multithreaded Processors,” Concurrency and Computation: Practice and Experience, vol. 27, issue 4, pp. 885-904, September 2014.

(1.83 MB)

Tomov, S., M. Faverge, P. Luszczek, and J. Dongarra, “Using MAGMA with PGI Fortran,” PGI Insider, November 2010.

(176.67 KB)

Anzt, H., J. Dongarra, G. Flegar, and E. S. Quintana-Orti, “Variable-Size Batched Gauss-Jordan Elimination for Block-Jacobi Preconditioning on Graphics Processors,” Parallel Computing, vol. 81, pp. 131-146, January 2019.

(1.9 MB)

Casanova, H., T. Bartol, F. Berman, A. Birnbaum, J. Dongarra, M. Ellisman, M. Faerman, E. Gockay, M. Miller, G. Obertelli, et al., “The Virtual Instrument: Support for Grid-enabled Scientific Simulations,” Journal of Parallel and Distributed Computing (submitted), October 2002.

(282.16 KB)

Casanova, H., T. Bartol, F. Berman, A. Birnbaum, J. Dongarra, M. Ellisman, M. Faerman, E. Gockay, M. Miller, G. Obertelli, et al., “The Virtual Instrument: Support for Grid-enabled Scientific Simulations,” International Journal of High Performance Computing Applications, vol. 18, no. 1, pp. 3-17, January 2004.

(282.16 KB)

Poster

Fortenberry, A., S. Tomov, and K. Wong, Extending MAGMA Portability with OneAPI , Dallas, TX, The International Conference for High Performance Computing, Networking, Storage, and Analysis (SC22), ACM Student Research Competition, November 2022.

(1.33 MB)

Gates, M., A. Charara, J. Kurzak, A. YarKhan, M. Al Farhan, D. Sukkari, and J. Dongarra, SLATE: Software for Linear Algebra Targeting Exascale (POSTER) , Houston, TX, 2020 Exascale Computing Project Annual Meeting, February 2020.

(546.56 KB)

Baboulin, M., V. Dobrev, J. Dongarra, C. Earl, J. Falcou, A. Haidar, I. Karlin, T. Kolev, I. Masliah, and S. Tomov, Towards a High-Performance Tensor Algebra Package for Accelerators , Gatlinburg, TN, moky Mountains Computational Sciences and Engineering Conference (SMC15), September 2015.

(1.76 MB)

Preprint

Hoefler, T., B. Stevens, A. F. Prein, J. Baehr, T. Schulthess, T. F. Stocker, J. Taylor, D. Klocke, P. Manninen, P. M. Forster, et al., Earth Virtualization Engines - A Technical Perspective , September 2023.

Hoefler, T., M. Copik, P. Beckman, A. Jones, I. Foster, M. Parashar, D. Reed, M. Troyer, T. Schulthess, D. Ernst, et al., XaaS: Acceleration as a Service to Enable Productive High-Performance Cloud Computing : arXiv, January 2024.

Presentation

Abdelfattah, A., M. Baboulin, V. Dobrev, J. Dongarra, C. Earl, J. Falcou, A. Haidar, I. Karlin, T. Kolev, I. Masliah, et al., Accelerating Tensor Contractions in High-Order FEM with MAGMA Batched , Atlanta, GA, SIAM Conference on Computer Science and Engineering (SIAM CSE17), Presentation, March 2017.

(9.29 MB)

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