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Journal Article

Dongarra, J., and S. Moore, “Empirical Performance Tuning of Dense Linear Algebra Software,” in Performance Tuning of Scientific Applications (to appear), 00 2010.

Li, Y., A. YarKhan, J. Dongarra, K. Seymour, and A. Hurault, “Enabling Workflows in GridSolve: Request Sequencing and Service Trading,” Journal of Supercomputing, vol. 64, issue 3, pp. 1133-1152, June 2013.

(821.29 KB)

Hiroyasu, T., M. Miki, S. Ogura, K. Aoi, T. Yoshida, Y. Okamoto, and J. Dongarra, “Energy Minimization of Protein Tertiary Structure by Parallel Simulated Annealing using Genetic Crossover,” Special Issue on Biological Applications of Genetic and Evolutionary Computation (submitted), March 2003.

(438.68 KB)

Ltaeif, H., P. Luszczek, and J. Dongarra, “Enhancing Parallelism of Tile Bidiagonal Transformation on Multicore Architectures using Tree Reduction,” Lecture Notes in Computer Science, vol. 7203, pp. 661-670, September 2012.

(185.77 KB)

Hadri, B., H. Ltaeif, E. Agullo, and J. Dongarra, “Enhancing Parallelism of Tile QR Factorization for Multicore Architectures,” Submitted to Transaction on Parallel and Distributed Systems, December 2009.

(464.23 KB)

Cao, Q., G. Bosilca, N. Losada, W. Wu, D. Zhong, and J. Dongarra, “Evaluating Data Redistribution in PaRSEC,” IEEE Transactions on Parallel and Distributed Systems, vol. 33, no. 8, pp. 1856-1872, August 2022.

(3.19 MB)

Gabriel, E., G. Fagg, and J. Dongarra, “Evaluating The Performance Of MPI-2 Dynamic Communicators And One-Sided Communication,” Lecture Notes in Computer Science, Recent Advances in Parallel Virtual Machine and Message Passing Interface, 10th European PVM/MPI User's Group Meeting, vol. 2840, Venice, Italy, Springer-Verlag, Berlin, pp. 88-97, September 2003.

(254.08 KB)

Jagode, H., A. Danalis, R. Hoque, M. Faverge, and J. Dongarra, “Evaluation of Dataflow Programming Models for Electronic Structure Theory,” Concurrency and Computation: Practice and Experience: Special Issue on Parallel and Distributed Algorithms, vol. 2018, issue e4490, pp. 1–20, May 2018.

(1.69 MB)

Lopez, M. G., W. Joubert, V. Larrea, O. Hernandez, A. Haidar, S. Tomov, and J. Dongarra, “Evaluation of Directive-Based Performance Portable Programming Models,” International Journal of High Performance Computing and Networking, vol. 14, issue 2, pp. 165-182.

(1.12 MB)

Bland, W., A. Bouteiller, T. Herault, J. Hursey, G. Bosilca, and J. Dongarra, “An evaluation of User-Level Failure Mitigation support in MPI,” Computing, vol. 95, issue 12, pp. 1171-1184, December 2013.

(311.23 KB)

Dongarra, J., “The evolution of mathematical software,” Communications of the ACM, vol. 65227, issue 12, pp. 66 - 72, December 2022.

Anzt, H., B. Haugen, J. Kurzak, P. Luszczek, and J. Dongarra, “Experiences in autotuning matrix multiplication for energy minimization on GPUs,” Concurrency in Computation: Practice and Experience, vol. 27, issue 17, pp. 5096-5113, December 2015.

(1.98 MB)

Anzt, H., B. Haugen, J. Kurzak, P. Luszczek, and J. Dongarra, “Experiences in Autotuning Matrix Multiplication for Energy Minimization on GPUs,” Concurrency and Computation: Practice and Experience, vol. 27, issue 17, pp. 5096 - 5113, Oct 12, 2015.

(1.99 MB)

Fischer, M., and J. Dongarra, “Experiences with Windows 95/NT as a Cluster Computing Platform for Parallel Computing,” Parallel and Distributed Computing Practices, Special Issue: Cluster Computing, vol. 2, no. 2: Nova Science Publishers, USA, pp. 119-128, February 1999.

(164.04 KB)

Iqbal, Z., S. Nooshabadi, I. Yamazaki, S. Tomov, and J. Dongarra, “Exploiting Block Structures of KKT Matrices for Efficient Solution of Convex Optimization Problems,” IEEE Access, 2021.

(1.35 MB)

Buttari, A., J. Dongarra, J. Kurzak, J. Langou, J. Langou, P. Luszczek, and S. Tomov, “Exploiting Mixed Precision Floating Point Hardware in Scientific Computations,” in High Performance Computing and Grids in Action, Amsterdam, IOS Press, January 2008.

(92.95 KB)

Buttari, A., J. Dongarra, J. Kurzak, J. Langou, J. Langou, P. Luszczek, and S. Tomov, “Exploiting Mixed Precision Floating Point Hardware in Scientific Computations,” In High Performance Computing and Grids in Action (to appear), Amsterdam, IOS Press, 00 2007.

(122.01 KB)

Langou, J., J. Langou, P. Luszczek, J. Kurzak, A. Buttari, and J. Dongarra, “Exploiting the Performance of 32 bit Floating Point Arithmetic in Obtaining 64 bit Accuracy,” University of Tennessee Computer Science Tech Report, no. UT-CS-06-574, LAPACK Working Note #175, April 2006.

(221.39 KB)

Bland, W., P. Du, A. Bouteiller, T. Herault, G. Bosilca, and J. Dongarra, “Extending the scope of the Checkpoint-on-Failure protocol for forward recovery in standard MPI,” Concurrency and Computation: Practice and Experience, July 2013.

(3.89 MB)

Abdelfattah, A., A. Haidar, S. Tomov, and J. Dongarra, “Factorization and Inversion of a Million Matrices using GPUs: Challenges and Countermeasures,” Procedia Computer Science, vol. 108, pp. 606–615, June 2017.

(643.44 KB)

Bosilca, G., A. Bouteiller, A. Guermouche, T. Herault, Y. Robert, P. Sens, and J. Dongarra, “A Failure Detector for HPC Platforms,” The International Journal of High Performance Computing Applications, vol. 32, issue 1, pp. 139–158, January 2018.

(1.04 MB)

Abdelfattah, A., A. Haidar, S. Tomov, and J. Dongarra, “Fast Cholesky Factorization on GPUs for Batch and Native Modes in MAGMA,” Journal of Computational Science, vol. 20, pp. 85–93, May 2017.

(3.6 MB)

Anzt, H., J. Dongarra, and E. S. Quintana-Orti, “Fine-grained Bit-Flip Protection for Relaxation Methods,” Journal of Computational Science, November 2016.

(1.47 MB)

Fagg, G., J. Pjesivac–Grbovic, G. Bosilca, T. Angskun, and J. Dongarra, “Flexible collective communication tuning architecture applied to Open MPI,” 2006 Euro PVM/MPI (submitted), Bonn, Germany, January 2006.

(206.58 KB)

Kabir, K., A. Haidar, S. Tomov, A. Bouteiller, and J. Dongarra, “A Framework for Out of Memory SVD Algorithms,” ISC High Performance 2017, pp. 158–178, June 2017.

(393.22 KB)

Du, P., R. Weber, P. Luszczek, S. Tomov, G. D. Peterson, and J. Dongarra, “From CUDA to OpenCL: Towards a Performance-portable Solution for Multi-platform GPU Programming,” Parallel Computing, vol. 38, no. 8, pp. 391-407, August 2012.

(1.64 MB)

Anzt, H., P. Luszczek, J. Dongarra, and V. Heuveline, “GPU-Accelerated Asynchronous Error Correction for Mixed Precision Iterative Refinement,” EuroPar 2012 (also LAWN 260), Rhodes Island, Greece, August 2012.

(662.98 KB)

Berman, F., A. Chien, K. Cooper, J. Dongarra, I. Foster, D. Gannon, L. Johnsson, K. Kennedy, C. Kesselman, J. Mellor-Crummey, et al., “The GrADS Project: Software Support for High-Level Grid Application Development,” International Journal of High Performance Applications and Supercomputing, vol. 15, no. 4, pp. 327-344, January 2001.

(271.52 KB)

Vadhiyar, S., and J. Dongarra, “GrADSolve - A Grid-based RPC System for Remote Invocation of Parallel Software,” Journal of Parallel and Distributed Computing (submitted), March 2003.

(241.3 KB)

Haidar, A., A. Abdelfattah, M. Zounon, S. Tomov, and J. Dongarra, “A Guide for Achieving High Performance with Very Small Matrices on GPUs: A Case Study of Batched LU and Cholesky Factorizations,” IEEE Transactions on Parallel and Distributed Systems, vol. 29, issue 5, pp. 973–984, May 2018.

(832.92 KB)

Beck, M., J. Dongarra, G. Fagg, A. Geist, P. Gray, J. Kohl, M. Migliardi, K. Moore, T. Moore, P. Papadopoulous, et al., “HARNESS: A Next Generation Distributed Virtual Machine,” International Journal on Future Generation Computer Systems, vol. 15, no. 5-6, pp. 571-582, January 1999.

(183.78 KB)

Fagg, G., A. Bukovsky, and J. Dongarra, “HARNESS and Fault Tolerant MPI,” Parallel Computing, vol. 27, no. 11, pp. 1479-1496, January 2001.

(164.2 KB)

Fagg, G., and J. Dongarra, “HARNESS Fault Tolerant MPI Design, Usage and Performance Issues,” Future Generation Computer Systems, vol. 18, no. 8, pp. 1127-1142, January 2002.

(403.41 KB)

Dongarra, J., M. Faverge, T. Herault, M. Jacquelin, J. Langou, and Y. Robert, “Hierarchical QR Factorization Algorithms for Multi-core Cluster Systems,” Parallel Computing, vol. 39, issue 4-5, pp. 212-232, May 2013.

(1.43 MB)

Ma, T., G. Bosilca, A. Bouteiller, and J. Dongarra, “HierKNEM: An Adaptive Framework for Kernel-Assisted and Topology-Aware Collective Communications on Many-core Clusters,” IPDPS 2012 (Best Paper), Shanghai, China, May 2012.

(165.9 KB)

Ltaeif, H., P. Luszczek, and J. Dongarra, “High Performance Bidiagonal Reduction using Tile Algorithms on Homogeneous Multicore Architectures,” ACM Transactions on Mathematical Software (TOMS), vol. 39, issue 3, no. 16, 2013.

(665.7 KB)

Palma, J., J. Dongarra, and V. Hernández, “High Performance Computing for Computational Science,” Lecture Notes in Computer Science, vol. 2565, VECPAR 2002, 5th International Conference June 26-28, 2002, Springer-Verlag, Berlin, January 2003.

Dongarra, J., and A. J. van der Steen, “High Performance Computing Systems: Status and Outlook,” Acta Numerica, vol. 21, Cambridge, UK, Cambridge University Press, pp. 379-474, May 2012.

(1.48 MB)

Dongarra, J., H. Meuer, H. D. Simon, and E. Strohmaier, “High Performance Computing Trends,” HERMIS, vol. 2, pp. 155-163, November 2001.

Dongarra, J., M. A. Heroux, and P. Luszczek, “High Performance Conjugate Gradient Benchmark: A new Metric for Ranking High Performance Computing Systems,” International Journal of High Performance Computing Applications, vol. 30, issue 1, pp. 3 - 10, February 2016.

(277.51 KB)

Du, P., P. Luszczek, and J. Dongarra, “High Performance Dense Linear System Solver with Resilience to Multiple Soft Errors,” ICCS 2012, Omaha, NE, June 2012.

(1.27 MB)

Du, P., P. Luszczek, and J. Dongarra, “High Performance Dense Linear System Solver with Soft Error Resilience,” IEEE Cluster 2011, Austin, TX, September 2011.

(1.27 MB)

Dongarra, J., and P. Luszczek, “High Performance Development for High End Computing with Python Language Wrapper (PLW),” International Journal for High Performance Computer Applications, vol. 21, no. 3, pp. 360-369, 00 2007.

(179.32 KB)

Chen, Z., and J. Dongarra, “Highly Scalable Self-Healing Algorithms for High Performance Scientific Computing,” IEEE Transactions on Computers, vol. 58, issue 11, pp. 1512-1524, November 2009.

(1.81 MB)

Dongarra, J., M. A. Heroux, and P. Luszczek, “High-Performance Conjugate-Gradient Benchmark: A New Metric for Ranking High-Performance Computing Systems,” The International Journal of High Performance Computing Applications, 2015.

(336.19 KB)

White, J. B., and J. Dongarra, “High-Performance High-Resolution Semi-Lagrangian Tracer Transport on a Sphere,” Journal of Computational Physics, vol. 230, issue 17, pp. 6778-6799, July 2011.

(1.68 MB)

Dongarra, J., and P. Luszczek, “How Elegant Code Evolves With Hardware: The Case Of Gaussian Elimination,” in Beautiful Code Leading Programmers Explain How They Think (Chapter 14), pp. 243-282, January 2008.

(257 KB)

Dongarra, J., and P. Luszczek, “How Elegant Code Evolves With Hardware: The Case Of Gaussian Elimination,” in Beautiful Code Leading Programmers Explain How They Think: O'Reilly Media, Inc., June 2007.

(257 KB)

Dongarra, J., and P. Luszczek, “HPC Challenge: Design, History, and Implementation Highlights,” On the Road to Exascale Computing: Contemporary Architectures in High Performance Computing (to appear): Chapman & Hall/CRC Press, 00 2012.

(469.92 KB)

Reed, D., D. Gannon, and J. Dongarra, “HPC Forecast,” Communications of the ACM, vol. 664648, issue 2, pp. 82 - 90, January 2023.

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