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Journal Article

YarKhan, A., and J. Dongarra, “Biological Sequence Alignment on the Computational Grid Using the GrADS Framework,” Future Generation Computing Systems, vol. 21, no. 6: Elsevier, pp. 980-986, June 2005.

(147.29 KB)

Danalis, A., P. Luszczek, G. Marin, J. Vetter, and J. Dongarra, “BlackjackBench: Portable Hardware Characterization with Automated Results Analysis,” The Computer Journal, March 2013.

(408.45 KB)

Anzt, H., S. Tomov, M. Gates, J. Dongarra, and V. Heuveline, “Block-asynchronous Multigrid Smoothers for GPU-accelerated Systems,” ICCS 2012, Omaha, NE, June 2012.

(608.95 KB)

Anzt, H., S. Tomov, M. Gates, J. Dongarra, and V. Heuveline, Block-asynchronous Multigrid Smoothers for GPU-accelerated Systems , no. UT-CS-11-689, December 2011.

(608.95 KB)

Anzt, H., S. Tomov, J. Dongarra, and V. Heuveline, “A Block-Asynchronous Relaxation Method for Graphics Processing Units,” Journal of Parallel and Distributed Computing, vol. 73, issue 12, pp. 1613–1626, December 2013.

(1.08 MB)

Fagg, G., and J. Dongarra, “Building and using a Fault Tolerant MPI implementation,” International Journal of High Performance Applications and Supercomputing (to appear), 00 2004.

Luszczek, P., J. Kurzak, and J. Dongarra, “Changes in Dense Linear Algebra Kernels - Decades Long Perspective,” in Solving the Schrodinger Equation: Has everything been tried? (to appear): Imperial College Press, 00 2011.

Herault, T., Y. Robert, A. Bouteiller, D. Arnold, K. Ferreira, G. Bosilca, and J. Dongarra, “Checkpointing Strategies for Shared High-Performance Computing Platforms,” International Journal of Networking and Computing, vol. 9, no. 1, pp. 28–52, 2019.

(490.5 KB)

Buttari, A., J. Langou, J. Kurzak, and J. Dongarra, “A Class of Parallel Tiled Linear Algebra Algorithms for Multicore Architectures,” Parallel Computing (to appear), 00 2010.

(612.23 KB)

Buttari, A., J. Langou, J. Kurzak, and J. Dongarra, “A Class of Parallel Tiled Linear Algebra Algorithms for Multicore Architectures,” Parallel Computing, vol. 35, pp. 38-53, 00 2009.

(274.74 KB)

Terpstra, D., H. Jagode, H. You, and J. Dongarra, “Collecting Performance Data with PAPI-C,” Tools for High Performance Computing 2009, 3rd Parallel Tools Workshop, Dresden, Germany, Springer Berlin / Heidelberg, pp. 157-173, May 2010.

(4.45 MB)

Luszczek, P., W. M. Sid-Lakhdar, and J. Dongarra, “Combining multitask and transfer learning with deep Gaussian processes for autotuning-based performance engineering,” The International Journal of High Performance Computing Applications, March 2023.

Ballard, G., D. Becker, J. Demmel, J. Dongarra, A. Druinsky, I. Peled, O. Schwartz, S. Toledo, and I. Yamazaki, “Communication-Avoiding Symmetric-Indefinite Factorization,” SIAM Journal on Matrix Analysis and Application, vol. 35, issue 4, pp. 1364-1406, July 2014.

(593.18 KB)

Bosilca, G., A. Bouteiller, T. Herault, V. Le Fèvre, Y. Robert, and J. Dongarra, “Comparing Distributed Termination Detection Algorithms for Modern HPC Platforms,” International Journal of Networking and Computing, vol. 12, issue 1, pp. 26 - 46, January 2022.

Le Fèvre, V., T. Herault, Y. Robert, A. Bouteiller, A. Hori, G. Bosilca, and J. Dongarra, “Comparing the Performance of Rigid, Moldable, and Grid-Shaped Applications on Failure-Prone HPC Platforms,” Parallel Computing, vol. 85, pp. 1–12, July 2019.

(865.18 KB)

Arbenz, P., A. Cleary, J. Dongarra, and M. Hegland, “A Comparison of Parallel Solvers for General Narrow Banded Linear Systems,” Parallel and Distributed Computing Practices, vol. 2, pp. 385-400, October 2002.

(304.96 KB)

Eijkhout, V., E. Fuentes, T. Eidson, and J. Dongarra, “The Component Structure of a Self-Adapting Numerical Software System,” International Journal of Parallel Programming, vol. 33, no. 2, June 2005.

(64.88 KB)

Bosilca, G., A. Bouteiller, T. Herault, Y. Robert, and J. Dongarra, “Composing Resilience Techniques: ABFT, Periodic, and Incremental Checkpointing,” International Journal of Networking and Computing, vol. 5, no. 1, pp. 2-15, January 2015.

(755.54 KB)

Haidar, A., H. Ltaeif, P. Luszczek, and J. Dongarra, “A Comprehensive Study of Task Coalescing for Selecting Parallelism Granularity in a Two-Stage Bidiagonal Reduction,” IPDPS 2012, Shanghai, China, May 2012.

(480.43 KB)

Sun, J., J. Fu, J. Drake, Q. Zhu, A. Haidar, M. Gates, S. Tomov, and J. Dongarra, “Computational Benefit of GPU Optimization for Atmospheric Chemistry Modeling,” Journal of Advances in Modeling Earth Systems, vol. 10, issue 8, pp. 1952–1969, August 2018.

(3.4 MB)

Kovalchuk, S. V., V. V. Krzhizhanovskaya, M. Paszyński, D. Kranzlmüller, J. Dongarra, and P. M. A. Sloot, “Computational science for a better future,” Journal of Computational Science, vol. 62, pp. 101745, July 2022.

Sloot, P. M., D. Abramson, A. V. Bogdanov, J. Dongarra, A. Zomaya, and Y. Gorbachev, “Computational Science — ICCS 2003,” Lecture Notes in Computer Science, vol. 2657-2660, ICCS 2003, International Conference. Melbourne, Australia, Springer-Verlag, Berlin, June 2003.

“Computational Science – ICCS 2009, Proceedings of the 9th International Conference,” Lecture Notes in Computer Science: Theoretical Computer Science and General Issues, vol. -, no. 5544-5545, Baton Rouge, LA, May 2009.

Yamazaki, I., S. Tomov, and J. Dongarra, “Computing Low-rank Approximation of a Dense Matrix on Multicore CPUs with a GPU and its Application to Solving a Hierarchically Semiseparable Linear System of Equations,” Scientific Programming, 2015.

(648.87 KB)

Baboulin, M., J. Dongarra, S. Gratton, and J. Langou, “Computing the Conditioning of the Components of a Linear Least Squares Solution,” VECPAR '08, High Performance Computing for Computational Science, Toulouse, France, January 2008.

(374.97 KB)

Baboulin, M., J. Dongarra, S. Gratton, and J. Langou, “Computing the Conditioning of the Components of a Linear Least-squares Solution,” Numerical Linear Algebra with Applications, vol. 16, no. 7, pp. 517-533, 00 2009.

(374.97 KB)

Chen, Z., and J. Dongarra, “Condition Numbers of Gaussian Random Matrices,” SIAM Journal on Matrix Analysis and Applications (to appear), January 2005.

(186.46 KB)

Tomov, S., J. Langou, A. Canning, L-W. Wang, and J. Dongarra, “Conjugate-Gradient Eigenvalue Solvers in Computing Electronic Properties of Nanostructure Architectures,” International Journal of Computational Science and Engineering (to appear), January 2005.

(428.21 KB)

Tomov, S., J. Langou, J. Dongarra, A. Canning, and L-W. Wang, “Conjugate-Gradient Eigenvalue Solvers in Computing Electronic Properties of Nanostructure Architectures,” International Journal of Computational Science and Engineering, vol. 2, no. 3/4, pp. 205-212, 00 2006.

(428.21 KB)

Bosilca, G., C. Coti, T. Herault, P. Lemariner, and J. Dongarra, “Constructing Resiliant Communication Infrastructure for Runtime Environments in Advances in Parallel Computing,” Advances in Parallel Computing - Parallel Computing: From Multicores and GPU's to Petascale, vol. 19, pp. 441-451, 2010.

Lemariner, P., G. Bosilca, C. Coti, T. Herault, and J. Dongarra, “Constructing Resilient Communication Infrastructure for Runtime Environments,” ParCo 2009, Lyon France, September 2009.

Arnold, D., S. Vadhiyar, and J. Dongarra, “On the Convergence of Computational and Data Grids,” Parallel Processing Letters, vol. 11, no. 2-3, pp. 187-202, January 2001.

(213.35 KB)

Bouteiller, A., T. Herault, G. Bosilca, and J. Dongarra, “Correlated Set Coordination in Fault Tolerant Message Logging Protocols,” Concurrency and Computation: Practice and Experience, vol. 25, issue 4, pp. 572-585, March 2013.

(636.68 KB)

Agarwal, P., R. A.. Alexander, E.. Apra, S. Balay, A. S. Bland, J. Colgan, E. D'Azevedo, J. Dongarra, T. Dunigan, M. Fahey, et al., “Cray X1 Evaluation Status Report,” Oak Ridge National Laboratory Report, vol. /-2004/13, January 2004.

(817.33 KB)

Mellor-Crummey, J., P. Beckman, J. Dongarra, B. Miller, and K. Yelick, “Creating Software Technology to Harness the Power of Leadership-class Computing Systems,” DOE SciDAC Review (to appear), June 2007.

(617.02 KB)

Bosilca, G., A. Bouteiller, A. Danalis, T. Herault, P. Lemariner, and J. Dongarra, “DAGuE: A generic distributed DAG Engine for High Performance Computing.,” Parallel Computing, vol. 38, no. 1-2: Elsevier, pp. 27-51, 00 2012.

(830.85 KB)

Dongarra, J., R. Graybill, W. Harrod, R. Lucas, E. Lusk, P. Luszczek, J. McMahon, A. Snavely, J. Vetter, K. Yelick, et al., “DARPA's HPCS Program: History, Models, Tools, Languages,” in Advances in Computers, vol. 72: Elsevier, January 2008.

(3.61 MB)

Pjesivac–Grbovic, J., G. Bosilca, G. Fagg, T. Angskun, and J. Dongarra, “Decision Trees and MPI Collective Algorithm Selection Problem,” Euro-Par 2007, Rennes, France, Springer, pp. 105–115, August 2007.

(552.94 KB)

Dongarra, J., J. Kurzak, P. Luszczek, and S. Tomov, “Dense Linear Algebra on Accelerated Multicore Hardware,” High Performance Scientific Computing: Algorithms and Applications, London, UK, Springer-Verlag, 00 2012.

Bosilca, G., A. Bouteiller, A. Danalis, T. Herault, P. Luszczek, and J. Dongarra, “Dense Linear Algebra on Distributed Heterogeneous Hardware with a Symbolic DAG Approach,” Scalable Computing and Communications: Theory and Practice: John Wiley & Sons, pp. 699-735, March 2013.

(1.01 MB)

Kurzak, J., H. Ltaeif, J. Dongarra, and R. M. Badia, “Dependency-Driven Scheduling of Dense Matrix Factorizations on Shared-Memory Systems,” PPAM 2009, Poland, September 2009.

Casanova, H., J. Plank, M. Beck, and J. Dongarra, “Deploying Fault-tolerance and Task Migration with NetSolve,” Future Generation Computer Systems, vol. 15, no. 5-6: Elsevier, pp. 745-755, October 1999.

(236 KB)

D'Azevedo, E., and J. Dongarra, “The Design and Implementation of the Parallel Out of Core ScaLAPACK LU, QR, and Cholesky Factorization Routines,” Concurrency: Practice and Experience, vol. 12, no. 15, pp. 1481-1493, January 2000.

(374.18 KB)

Kurzak, J., P. Luszczek, I. Yamazaki, Y. Robert, and J. Dongarra, “Design and Implementation of the PULSAR Programming System for Large Scale Computing,” Supercomputing Frontiers and Innovations, vol. 4, issue 1, 2017.

(764.96 KB)

Dongarra, J., Z. Chen, G. Bosilca, and J. Langou, “Disaster Survival Guide in Petascale Computing: An Algorithmic Approach,” in Petascale Computing: Algorithms and Applications (to appear): Chapman & Hall - CRC Press, 00 2007.

(260.18 KB)

Hiroyasu, T., M. Miki, M. Sano, H. Shimosaka, S. Tsutsui, and J. Dongarra, “Distributed Probablistic Model-Building Genetic Algorithm,” Lecture Notes in Computer Science, vol. 2723: Springer-Verlag, Heidelberg, pp. 1015-1028, January 2003.

(288.91 KB)

Yamazaki, I., A. Ida, R. Yokota, and J. Dongarra, “Distributed-Memory Lattice H-Matrix Factorization,” The International Journal of High Performance Computing Applications, vol. 33, issue 5, pp. 1046–1063, August 2019.

(1.14 MB)

Voemel, C., S. Tomov, and J. Dongarra, “Divide and Conquer on Hybrid GPU-Accelerated Multicore Systems,” SIAM Journal on Scientific Computing, vol. 34(2), pp. C70-C82, April 2012.

Voemel, C., S. Tomov, and J. Dongarra, “Divide & Conquer on Hybrid GPU-Accelerated Multicore Systems,” SIAM Journal on Scientific Computing (submitted), August 2010.

Baboulin, M., D. Becker, G. Bosilca, A. Danalis, and J. Dongarra, “An Efficient Distributed Randomized Algorithm for Solving Large Dense Symmetric Indefinite Linear Systems,” Parallel Computing, vol. 40, issue 7, pp. 213-223, July 2014.

(1.42 MB)

Pages