Publications

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2004
Fagg, G., E. Gabriel, G. Bosilca, T. Angskun, Z. Chen, J. Pjesivac–Grbovic, K. London, and J. Dongarra, “Extending the MPI Specification for Process Fault Tolerance on High Performance Computing Systems,” Proceedings of ISC2004 (to appear), Heidelberg, Germany, June 2004.  (548.38 KB)
Eidson, T., V. Eijkhout, and J. Dongarra, “Improvements in the Efficient Composition of Applications,” IPDPS 2004, NGS Workshop (to appear), Sante Fe, 00 2004.  (42.85 KB)
Chen, Z., J. Dongarra, P. Luszczek, and K. Roche, “LAPACK for Clusters Project: An Example of Self Adapting Numerical Software,” Proceedings of the 37th Annual Hawaii International Conference on System Sciences (HICSS 04'), vol. 9, Big Island, Hawaii, pp. 90282, January 2004.  (80.97 KB)
Moore, K., J. Dongarra, S. Moore, and E. Grosse, “NetBuild: Automated Installation and Use of Network-Accessible Software Libraries,” ICL Technical Report, no. ICL-UT-04-02, January 2004.  (80.52 KB)
Chen, Z., and J. Dongarra, “Numerically Stable Real-Number Codes Based on Random Matrices,” University of Tennessee Computer Science Department Technical Report, vol. –04-526, October 2004.  (91.66 KB)
Dongarra, J., and A. Lastovetsky, “An Overview of Heterogeneous High Performance and Grid Computing,” Engineering the Grid (to appear): Nova Science Publishers, Inc., 00 2004.  (199.93 KB)
Dongarra, J., and A. Lastovetsky, “An Overview of Heterogeneous High Performance and Grid Computing,” Engineering the Grid (to appear): Nova Science Publishers, Inc., 00 2004.  (199.93 KB)
Dongarra, J., “Performance of Various Computers Using Standard Linear Equations Software (Linpack Benchmark Report),” University of Tennessee Computer Science Department Technical Report, CS-89-85, January 2004.  (6.42 MB)
Fagg, G., E. Gabriel, Z. Chen, T. Angskun, G. Bosilca, J. Pjesivac–Grbovic, and J. Dongarra, “Process Fault-Tolerance: Semantics, Design and Applications for High Performance Computing,” International Journal for High Performance Applications and Supercomputing (to appear), April 2004.  (186.9 KB)
Bosilca, G., Z. Chen, J. Dongarra, and J. Langou, “Recovery Patterns for Iterative Methods in a Parallel Unstable Environment,” ICL Technical Report, no. ICL-UT-04-04, January 2004.  (241.36 KB)
Demmel, J., J. Dongarra, V. Eijkhout, E. Fuentes, A. Petitet, R. Vuduc, C. Whaley, and K. Yelick, “Self Adapting Linear Algebra Algorithms and Software,” IEEE Proceedings (to appear), 00 2004.  (587.67 KB)
Vadhiyar, S., G. Fagg, and J. Dongarra, “Towards an Accurate Model for Collective Communications,” International Journal of High Performance Applications, Special Issue: Automatic Performance Tuning, vol. 18, no. 1, pp. 159-167, January 2004.  (250.73 KB)
Dongarra, J., “Trends in High Performance Computing,” The Computer Journal, vol. 47, no. 4: The British Computer Society, pp. 399-403, 00 2004.  (455.96 KB)
Casanova, H., T. Bartol, F. Berman, A. Birnbaum, J. Dongarra, M. Ellisman, M. Faerman, E. Gockay, M. Miller, G. Obertelli, et al., “The Virtual Instrument: Support for Grid-enabled Scientific Simulations,” International Journal of High Performance Computing Applications, vol. 18, no. 1, pp. 3-17, January 2004.  (282.16 KB)
2005
Chen, Z., and J. Dongarra, “Algorithm-Based Checkpoint-Free Fault Tolerance for Parallel Matrix Computations on Volatile Resources,” University of Tennessee Computer Science Department Technical Report, vol. –05-561, November 2005.  (266.54 KB)
Wolf, F., B. Mohr, J. Dongarra, and S. Moore, “Automatic analysis of inefficiency patterns in parallel applications,” Concurrency and Computation: Practice and Experience, Special issue "Automatic Performance Analysis" (submitted), 00 2005.  (233.31 KB)
Bhatia, N., F. Song, F. Wolf, J. Dongarra, B. Mohr, and S. Moore, “Automatic Experimental Analysis of Communication Patterns in Virtual Topologies,” In Proceedings of the International Conference on Parallel Processing, Oslo, Norway, IEEE Computer Society, June 2005.  (227.13 KB)
YarKhan, A., and J. Dongarra, “Biological Sequence Alignment on the Computational Grid Using the GrADS Framework,” Future Generation Computing Systems, vol. 21, no. 6: Elsevier, pp. 980-986, June 2005.  (147.29 KB)
Tomov, S., J. Langou, A. Canning, L-W. Wang, and J. Dongarra, “Comparison of Nonlinear Conjugate-Gradient methods for computing the Electronic Properties of Nanostructure Architectures,” Proceedings of 5th International Conference on Computational Science (ICCS), Atlanta, GA, USA, Springer's Lecture Notes in Computer Science, pp. 317-325, January 2005.  (172.86 KB)
Tomov, S., J. Langou, A. Canning, L-W. Wang, and J. Dongarra, “Comparison of Nonlinear Conjugate-Gradient methods for computing the Electronic Properties of Nanostructure Architectures,” Proceedings of 5th International Conference on Computational Science (ICCS), Atlanta, GA, USA, Springer's Lecture Notes in Computer Science, pp. 317-325, January 2005.  (172.86 KB)
Eijkhout, V., E. Fuentes, T. Eidson, and J. Dongarra, “The Component Structure of a Self-Adapting Numerical Software System,” International Journal of Parallel Programming, vol. 33, no. 2, June 2005.  (64.88 KB)
Chen, Z., and J. Dongarra, “Condition Numbers of Gaussian Random Matrices,” University of Tennessee Computer Science Department Technical Report, vol. –04-539, 00 2005.  (186.46 KB)
Chen, Z., and J. Dongarra, “Condition Numbers of Gaussian Random Matrices,” SIAM Journal on Matrix Analysis and Applications (to appear), January 2005.  (186.46 KB)
Tomov, S., J. Langou, A. Canning, L-W. Wang, and J. Dongarra, “Conjugate-Gradient Eigenvalue Solvers in Computing Electronic Properties of Nanostructure Architectures,” International Journal of Computational Science and Engineering (to appear), January 2005.  (428.21 KB)
You, H., K. Seymour, and J. Dongarra, “An Effective Empirical Search Method for Automatic Software Tuning,” ICL Technical Report, no. ICL-UT-05-02, January 2005.  (74.66 KB)
Chen, Z., G. Fagg, E. Gabriel, J. Langou, T. Angskun, G. Bosilca, and J. Dongarra, “Fault Tolerant High Performance Computing by a Coding Approach,” Proceedings of ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming (to appear), Chicago, Illinois, January 2005.  (209.37 KB)
Bosilca, G., J. Dongarra, G. Fagg, and J. Langou, “Hash Functions for Datatype Signatures in MPI,” Proceedings of 12th European Parallel Virtual Machine and Message Passing Interface Conference - Euro PVM/MPI, vol. 3666, Sorrento (Naples), Italy, Springer-Verlag Berlin, pp. 76-83, September 2005.  (304.2 KB)
Moore, S., F. Wolf, J. Dongarra, and B. Mohr, “Improving Time to Solution with Automated Performance Analysis,” Second Workshop on Productivity and Performance in High-End Computing (P-PHEC) at 11th International Symposium on High Performance Computer Architecture (HPCA-2005), San Francisco, February 2005.  (112.63 KB)
Luszczek, P., J. Dongarra, D. Koester, R. Rabenseifner, B. Lucas, J. Kepner, J. McCalpin, D. Bailey, and D. Takahashi, Introduction to the HPC Challenge Benchmark Suite , March 2005.  (124.86 KB)
Dongarra, J., and P. Luszczek, “Introduction to the HPCChallenge Benchmark Suite,” ICL Technical Report, no. ICL-UT-05-01, January 2005.  (124.86 KB)
Demmel, J., and J. Dongarra, LAPACK 2005 Prospectus: Reliable and Scalable Software for Linear Algebra Computations on High End Computers : LAPACK Working Note 164, January 2005.  (172.59 KB)
Jones, W. B., G. Bester, A. Canning, A. Franceschetti, P. A. Graf, K. Kim, J. Langou, L-W. Wang, J. Dongarra, and A. Zunger, “NanoPSE: A Nanoscience Problem Solving Environment for Atomistic Electronic Structure of Semiconductor Nanostructures,” Journal of Physics: Conference Series, issue 16, pp. 277-282, June 2005.  (476.64 KB)
Seymour, K., A. YarKhan, S. Agrawal, and J. Dongarra, “NetSolve: Grid Enabling Scientific Computing Environments,” Grid Computing and New Frontiers of High Performance Processing, no. 14: Elsevier, 00 2005.  (425 KB)
Berman, F., H. Casanova, A. Chien, K. Cooper, H. Dail, A. Dasgupta, W. Deng, J. Dongarra, L. Johnsson, K. Kennedy, et al., “New Grid Scheduling and Rescheduling Methods in the GrADS Project,” International Journal of Parallel Programming, vol. 33, no. 2: Springer, pp. 209-229, June 2005.  (306.41 KB)
Dongarra, J., “A Not So Simple Matter of Software,” NCSA Access Online: NCSA, 00 2005.  (457.69 KB)
Chen, Z., and J. Dongarra, “Numerically Stable Real Number Codes Based on Random Matrices,” The International Conference on Computational Science, Atlanta, GA, LNCS 3514, Springer-Verlag, January 2005.  (166.2 KB)
Shimosaka, H., T. Hiroyasu, M. Miki, and J. Dongarra, “Optimization Problem Solving System Using GridRPC,” IEEE Transactions on Parallel and Distributed Systems (submitted), January 2005.  (740.57 KB)
Bhatia, N., S. Moore, F. Wolf, J. Dongarra, and B. Mohr, “A Pattern-Based Approach to Automated Application Performance Analysis,” Workshop on Patterns in High Performance Computing, University of Illinois at Urbana-Champaign, May 2005.  (3.47 MB)
Pjesivac–Grbovic, J., T. Angskun, G. Bosilca, G. Fagg, E. Gabriel, and J. Dongarra, “Performance Analysis of MPI Collective Operations,” 4th International Workshop on Performance Modeling, Evaluation, and Optmization of Parallel and Distributed Systems (PMEO-PDS '05), Denver, Colorado, April 2005.  (1018.28 KB)
Pjesivac–Grbovic, J., T. Angskun, G. Bosilca, G. Fagg, E. Gabriel, and J. Dongarra, “Performance Analysis of MPI Collective Operations,” Cluster Computing Journal (to appear), January 2005.  (1018.28 KB)
Bosilca, G., Z. Chen, J. Dongarra, and J. Langou, “Recovery Patterns for Iterative Methods in a Parallel Unstable Environment,” University of Tennessee Computer Science Department Technical Report, UT-CS-04-538, 00 2005.  (241.36 KB)
Meek, E., J. Larkin, and J. Dongarra, “Remote Software Toolkit Installer,” ICL Technical Report, no. ICL-UT-05-04, June 2005.  (490.6 KB)
Moore, S., F. Wolf, J. Dongarra, S. Shende, A. D. Malony, and B. Mohr, “A Scalable Approach to MPI Application Performance Analysis,” In Proc. of the 12th European Parallel Virtual Machine and Message Passing Interface Conference: Springer LNCS, September 2005.  (988.58 KB)
Fagg, G., T. Angskun, G. Bosilca, J. Pjesivac–Grbovic, and J. Dongarra, “Scalable Fault Tolerant MPI: Extending the Recovery Algorithm,” Proceedings of 12th European Parallel Virtual Machine and Message Passing Interface Conference - Euro PVM/MPI, vol. 3666, Sorrento (Naples) , Italy, Springer-Verlag Berlin, pp. 67, September 2005.  (144.86 KB)
Vadhiyar, S., and J. Dongarra, “Self Adaptivity in Grid Computing,” Concurrency and Computation: Practice and Experience, Special Issue: Grid Performance, vol. 17, no. 2-4, pp. 235-257, 00 2005.  (394.66 KB)
Vadhiyar, S., G. Fagg, and J. Dongarra, “Towards an Accurate Model for Collective Communications,” ICL Technical Report, no. ICL-UT-05-03, January 2005.  (250.73 KB)
2006
Chen, Z., and J. Dongarra, “Algorithm-Based Checkpoint-Free Fault Tolerance for Parallel Matrix Computations on Volatile Resources,” IPDPS 2006, 20th IEEE International Parallel and Distributed Processing Symposium, Rhodes Island, Greece, January 2006.  (266.54 KB)
Dongarra, J., N. Emad, and S. Abolfazl Shahzadeh-Fazeli, “An Asynchronous Algorithm on NetSolve Global Computing System,” Future Generation Computer Systems, vol. 22, issue 3, pp. 279-290, February 2006.  (568.92 KB)
Seymour, K., H. You, and J. Dongarra, “ATLAS on the BlueGene/L – Preliminary Results,” ICL Technical Report, no. ICL-UT-06-10, January 2006.  (46.19 KB)
Tomov, S., J. Langou, J. Dongarra, A. Canning, and L-W. Wang, “Conjugate-Gradient Eigenvalue Solvers in Computing Electronic Properties of Nanostructure Architectures,” International Journal of Computational Science and Engineering, vol. 2, no. 3/4, pp. 205-212, 00 2006.  (428.21 KB)

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